Index

Symbols

1. Define a workflow

2. Submit the workflow

_

__init__() (sloop.env.ContextEnv method) (sloop.grid.GeoSelector method) (sloop.interp.InterpFlag method) (sloop.interp.Regridder method) (sloop.io.CacheManager method) (sloop.io.SloopArgumentHelpFormatter method) (sloop.job.BasicJobManager method) (sloop.job.Job method) (sloop.job.JobStatus method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) (sloop.log.LoggingLevelContext method) (sloop.models.hycom3d.atmfrc.AtmFrc method) (sloop.models.hycom3d.rivers.Rivers method)

A

add_argument() (sloop.io.SloopArgumentHelpFormatter method) add_arguments() (sloop.io.SloopArgumentHelpFormatter method) add_log_level_parser_arguments() (in module sloop.log)

add_logging_parser_arguments() (in module sloop.log) add_text() (sloop.io.SloopArgumentHelpFormatter method) add_usage() (sloop.io.SloopArgumentHelpFormatter method) AtmFrc (class in sloop.models.hycom3d.atmfrc)

B

BasicJobManager (class in sloop.job) bin2hycom() (in module sloop.models.hycom3d.io)

build_meteo_list() (in module sloop.models.croco.atmfrc) build_obc_list() (in module sloop.models.croco.obcfrc)

C

CacheManager (class in sloop.io) celsius2kelvin() (in module sloop.phys) check_env_vars() (in module sloop.env) check_exp_dir() (in module sloop.env) check_grid_dimensions() (in module sloop.models.hycom3d.io) check_status() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) check_vapp() (in module sloop.env) check_vortex_dir() (in module sloop.env) clean() (sloop.interp.Regridder method)

clear() (sloop.io.CacheManager method) commands (sloop.job.BasicJobManager attribute) (sloop.job.PbsJobManager attribute) (sloop.job.SlurmJobManager attribute) COMPLETING (sloop.job.JobStatus attribute) concat_ascii_files() (in module sloop.io) concat_field_ncfiles() (in module sloop.models.hycom3d.postprod) concat_met_files() (in module sloop.models.croco.atmfrc) ContextEnv (class in sloop.env) convert_from_julian_day() (in module sloop.times) convert_to_julian_day() (in module sloop.times)

D

decumul() (sloop.models.hycom3d.atmfrc.AtmFrc static method) decumul_flux() (in module sloop.models.croco.atmfrc) delete() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

delete_force() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) demerliac_sel() (in module sloop.models.hycom3d.spnudge)

E

end_section() (sloop.io.SloopArgumentHelpFormatter method) environment variable HPC_TARGET, [1]

erode_coast() (in module sloop.filters) erode_mask_vec() (in module sloop.filters) EXITING (sloop.job.JobStatus attribute) extract_metazone() (in module sloop.models.hycom3d.postprod)

F

FAILED (sloop.job.JobStatus attribute) find_monday() (in module sloop.times) find_session() (sloop.io.CacheManager method) FINISHED (sloop.job.JobStatus attribute) format_ds() (in module sloop.models.croco.__init__) (in module sloop.models.croco.io) (in module sloop.models.hycom3d.__init__) (in module sloop.models.hycom3d.io)

format_help() (sloop.io.SloopArgumentHelpFormatter method) format_obc_to_extract() (in module sloop.models.croco.obcfrc) format_to_croco() (in module sloop.models.croco.atmfrc) from_json() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) from_type() (sloop.job.BasicJobManager static method) (sloop.job.PbsJobManager static method) (sloop.job.SlurmJobManager static method)

G

geosel() (in module sloop.grid) GeoSelector (class in sloop.grid) get_ab_file_names() (in module sloop.models.hycom3d.io) get_cf_specs() (in module sloop.models.croco.__init__) (in module sloop.models.hycom3d.__init__) get_cmdargs_nc_time_splitting() (in module sloop.models.hycom3d.postprod) get_concat_clargs() (in module sloop.models.hycom3d.postprod) get_constant_patterns() (in module sloop.models.croco.__init__) (in module sloop.models.hycom3d.__init__) get_dates_from_file() (in module sloop.models.croco.obcfrc) get_demerliac_date() (in module sloop.models.hycom3d.spnudge) get_dim_name_from_axis() (in module sloop.cf) get_extract_cmdargs() (in module sloop.models.hycom3d.postprod) get_field_from_config() (in module sloop.env) get_fields_from_cfg() (in module sloop.models.hycom3d.postprod) get_files() (sloop.io.CacheManager method) get_filter_clargs() (in module sloop.models.hycom3d.postprod) get_interpolation_clargs() (in module sloop.models.hycom3d.postprod) get_job() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) get_jobids() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) get_jobs() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

get_lat_coord_name() (in module sloop.cf) get_lon_coord_name() (in module sloop.cf) get_name_from_specs() (in module sloop.cf) get_overview() (sloop.job.BasicJobManager method) (sloop.job.Job method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) get_overview_header() (sloop.job.Job class method) get_postprod_term() (in module sloop.models.hycom3d.postprod) get_restart_date() (in module sloop.models.croco.io) get_section_from_config() (in module sloop.env) get_session_dir() (sloop.io.CacheManager method) get_status() (sloop.job.BasicJobManager method) (sloop.job.Job method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method) get_t_dim_name() (in module sloop.cf) get_tempconversion_clargs() (in module sloop.models.hycom3d.postprod) get_time_clim() (sloop.models.hycom3d.rivers.Rivers method) get_time_coord_name() (in module sloop.cf) get_tpl_files() (in module sloop.models.croco.__init__) get_vtx_geometries() (in module sloop.models.hycom3d.postprod) get_x_dim_name() (in module sloop.cf) get_y_dim_name() (in module sloop.cf) grib2dataset() (sloop.models.hycom3d.atmfrc.AtmFrc method) guess_hpc_target() (in module sloop.env)

H

HPC_TARGET, [1]

hycom2nc() (in module sloop.models.hycom3d.io)

I

INQUEUE (sloop.job.JobStatus attribute) interp_time() (in module sloop.interp) (sloop.models.hycom3d.atmfrc.AtmFrc method)

InterpFlag (class in sloop.interp) is_os_cmd_avail() (in module sloop.env) is_running() (sloop.job.Job method)

J

Job (class in sloop.job)

JobStatus (class in sloop.job)

L

LINEAR (sloop.interp.InterpFlag attribute) load_config_from_dict() (in module sloop.env)

load_env_config() (in module sloop.env) LoggingLevelContext (class in sloop.log)

M

main_setup_logging() (in module sloop.log) module sloop sloop.cf sloop.env sloop.filters sloop.grid sloop.interp sloop.io sloop.job sloop.log sloop.models.croco.__init__ sloop.models.croco.atmfrc sloop.models.croco.io sloop.models.croco.obcfrc sloop.models.hycom3d.__init__ sloop.models.hycom3d.atmfrc sloop.models.hycom3d.io sloop.models.hycom3d.postprod sloop.models.hycom3d.rivers sloop.models.hycom3d.spnudge sloop.phys sloop.times

N

nc2hycom() (in module sloop.models.hycom3d.io) nc_get_time() (in module sloop.io) nc_interp_at_freq_to_daily_nc() (in module sloop.interp)

nc_interp_at_freq_to_nc() (in module sloop.interp) nc_interp_time() (in module sloop.interp) nc_to_res() (in module sloop.models.hycom3d.io) ncdiff() (in module sloop.models.hycom3d.spnudge)

O

outgen() (sloop.models.hycom3d.atmfrc.AtmFrc static method)

overview_format (sloop.job.Job attribute)

P

parameters() (sloop.models.hycom3d.atmfrc.AtmFrc static method) parse_scalar_declaration() (in module sloop.models.hycom3d.io) PbsJobManager (class in sloop.job) PENDING (sloop.job.JobStatus attribute) period_vortex_to_pandas() (in module sloop.times) PERSISTENT (sloop.interp.InterpFlag attribute)

PICKED (sloop.interp.InterpFlag attribute) platforms_nc2dataset_preprocess() (sloop.models.hycom3d.rivers.Rivers method) platforms_nc2datasets() (sloop.models.hycom3d.rivers.Rivers method) platforms_selection() (sloop.models.hycom3d.rivers.Rivers method) postproc_time_splitting() (in module sloop.models.hycom3d.postprod) preproc_time_splitting() (in module sloop.models.hycom3d.postprod)

R

radiativeflux() (in module sloop.phys) read_atm_data() (in module sloop.models.croco.atmfrc) read_blkdat_input() (in module sloop.models.hycom3d.io) read_config() (in module sloop.io) read_croco_grid() (in module sloop.models.croco.io) read_inicfg_files() (in module sloop.io) read_obc_data() (in module sloop.models.croco.obcfrc) read_patch_input() (in module sloop.models.hycom3d.io) read_regional_depth() (in module sloop.models.hycom3d.io) read_regional_grid() (in module sloop.models.hycom3d.io) read_regional_grid_b() (in module sloop.models.hycom3d.io) regrid() (sloop.interp.Regridder method) regrid_soap() (in module sloop.models.hycom3d.postprod)

Regridder (class in sloop.interp) regridmask() (sloop.models.hycom3d.atmfrc.AtmFrc static method) regridvar() (sloop.models.hycom3d.atmfrc.AtmFrc static method) rename_from_standard_name() (in module sloop.cf) rename_vars() (in module sloop.models.croco.atmfrc) (in module sloop.models.croco.obcfrc) (sloop.models.hycom3d.atmfrc.AtmFrc static method) reset_validminmax() (in module sloop.models.croco.obcfrc) rest_head() (in module sloop.models.hycom3d.io) Rivers (class in sloop.models.hycom3d.rivers) run_bin2hycom() (in module sloop.models.hycom3d.io) RUNNING (sloop.job.JobStatus attribute) running_time() (in module sloop.times)

S

select() (sloop.grid.GeoSelector method) set_validminmax() (in module sloop.models.croco.obcfrc) setup_defstretch() (in module sloop.models.hycom3d.io) setup_gen_inicon() (in module sloop.models.hycom3d.io) setup_logging() (in module sloop.log) setup_stmt_fns() (in module sloop.models.hycom3d.io) show_exp_info() (in module sloop.env) show_info() (in module sloop) show_sloop_paths() (in module sloop) show_versions() (in module sloop) sloop module sloop.cf module sloop.env module sloop.filters module sloop.grid module sloop.interp module sloop.io module sloop.job module sloop.log module sloop.models.croco.__init__ module sloop.models.croco.atmfrc module sloop.models.croco.io module

sloop.models.croco.obcfrc module sloop.models.hycom3d.__init__ module sloop.models.hycom3d.atmfrc module sloop.models.hycom3d.io module sloop.models.hycom3d.postprod module sloop.models.hycom3d.rivers module sloop.models.hycom3d.spnudge module sloop.phys module sloop.times module SloopArgumentHelpFormatter (class in sloop.io) SloopCrocoError SloopEnvError SloopError SloopHycomError SlurmJobManager (class in sloop.job) spectral_sel() (in module sloop.models.hycom3d.spnudge) start_section() (sloop.io.SloopArgumentHelpFormatter method) status_names (sloop.job.BasicJobManager attribute) (sloop.job.PbsJobManager attribute) (sloop.job.SlurmJobManager attribute) stripout_conda_env() (in module sloop.env) submit() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

T

tarpat() (in module sloop.io) to_dict() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

to_json() (sloop.job.BasicJobManager method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

U

UNKOWN (sloop.job.JobStatus attribute) update_status() (sloop.job.BasicJobManager method) (sloop.job.Job method) (sloop.job.PbsJobManager method) (sloop.job.SlurmJobManager method)

W

watervapormixingratio() (in module sloop.phys) windstress() (in module sloop.phys) write_abfiles() (sloop.models.hycom3d.atmfrc.AtmFrc static method) write_fini() (in module sloop.io) write_flowrate() (sloop.models.hycom3d.rivers.Rivers method)

write_ncfiles() (sloop.models.hycom3d.atmfrc.AtmFrc static method) (sloop.models.hycom3d.rivers.Rivers method) write_res() (in module sloop.models.hycom3d.io) write_rfiles() (sloop.models.hycom3d.rivers.Rivers method) write_tempsaln() (sloop.models.hycom3d.rivers.Rivers method) write_verticalgrid() (in module sloop.models.hycom3d.postprod)

X

xr_open_concat() (in module sloop.io)